INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| JQ340389 | Vibrio phage pVp-1 | 111506 | 39.707 | Vibrio | Group I | Vipunavirus | Vipunavirus | Ermolyevavirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus ATCC 33844 | High-quality | High-quality | 92.840 | AAI-based (high-confidence) | Vipunavirus | Vipunavirus pVp1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| JQ340774 | Hafnia phage Enc34 | 60496 | 51.084 | Hafnia | Group I | Enchivirus | Enchivirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Hafnia alvei | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Enchivirus | Enchivirus Enc34 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JQ341413 | Weissella phage phiYS61 | 33594 | 43.919 | Weissella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Weissella cibaria YS61 | Complete | High-quality | 100.000 | ITR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| JQ347801 | Escherichia phage JLK-2012 | 57198 | 50.719 | Escherichia | Group I | Marienburgvirus | Marienburgvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O55:H7 str. DEC5E | High-quality | High-quality | 99.600 | AAI-based (high-confidence) | Marienburgvirus | Marienburgvirus JLK2012 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_2;cro orf_27;cro orf_28;antirepressor orf_41 |
| JQ362498 | Sphingomonas phage PAU | 219372 | 31.313 | Sphingomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sphingomonas paucimobilis, Felix d'Herelle Reference Center for Phages host #1398 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| JQ408219 | Ralstonia phage RSS0 | 7288 | 62.047 | Ralstonia | Group II | Restivirus | Restivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Ralstonia solanacearum | High-quality | High-quality | 93.140 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| JQ446452 | Salinivibrio phage CW02 | 49390 | 47.672 | Salinivibrio | Group I | Salinovirus | Salinovirus | Unclassified | Zobellviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salinivibrio costicola | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Salinovirus | Salinovirus utanense | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JQ512844 | Mycobacterium phage Twister | 51094 | 64.957 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus twister | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_31;immunity orf_63 |
| JQ513383 | Klebsiella phage vB_KleM_RaK2 | 345809 | 31.702 | Klebsiella | Group I | Alcyoneusvirus | Alcyoneusvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella sp. | High-quality | High-quality | 99.770 | AAI-based (high-confidence) | Alcyoneusvirus | Alcyoneusvirus RaK2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JQ617284 | Helicobacter phage 1961P | 26836 | 35.516 | Helicobacter | Group I | Schmidvirus | Schmidvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Helicobacter pylori | High-quality | High-quality | 93.200 | AAI-based (high-confidence) | Schmidvirus | Schmidvirus sv1961P | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1 |