INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
AF489521	Lactococcus phage 4268	36596	35.367	Lactococcus	Group I	Sandinevirus	Sandinevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	cro orf_2;antirepressor orf_3;cro orf_8
AF493143	Pseudomonas phage gh-1	37359	57.416	Pseudomonas	Group I	Ghunavirus	Ghunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas putida	Complete	High-quality	100.000	DTR (high-confidence)	Ghunavirus	Ghunavirus gh1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
AF503408	Enterobacteria phage P7	101660	47.411	Enterobacteria	Group I	Punavirus	Punavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	98.560	AAI-based (high-confidence)	Punavirus	Punavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_44;parA orf_56;cro orf_104;cro orf_105
AF513032	Staphylococcus phage phi44AHJD	16784	29.623	Staphylococcus	Group I	Rosenblumvirus	Rosenblumvirus	Rakietenvirinae	Rountreeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	Complete	High-quality	100.000	ITR (high-confidence)	Rosenblumvirus	Rosenblumvirus rv44AHJD	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
AF513033	Staphylococcus phage P68	18227	29.325	Staphylococcus	Group I	Rosenblumvirus	Rosenblumvirus	Rakietenvirinae	Rountreeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	Complete	High-quality	100.000	ITR (high-confidence)	Rosenblumvirus	Rosenblumvirus rv66	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
AF527608	Salmonella phage P22-pbi	41724	47.090	Salmonella	Group I	Lederbergvirus	Lederbergvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enteria serovar typhimurium	High-quality	High-quality	100.000	AAI-based (high-confidence)	Lederbergvirus	Lederbergvirus P22	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	cro orf_18;antirepressor orf_19;integrase orf_23;integrase orf_39;cro orf_45;antirepressor orf_62;integrase orf_65
AF543311	Burkholderia phage Bcep781	48247	63.330	Burkholderia	Group I	Naesvirus	Naesvirus	Mascarenevirinae	Anamaviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Naesvirus	Naesvirus bcep781	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
AF547430	Mycobacterium phage OSmaximus	68999	66.502	Mycobacterium	Group I	Pegunavirus	Pegunavirus	Bclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium sp.	High-quality	High-quality	99.310	AAI-based (high-confidence)	Pegunavirus	Pegunavirus Pg1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
AF547987	Shigella phage Sf6	39043	47.468	Shigella	Group I	Lederbergvirus	Lederbergvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Shigella flexneri	High-quality	High-quality	97.690	AAI-based (high-confidence)	Lederbergvirus	Lederbergvirus Sf6	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_16;antirepressor orf_37
AJ006589	Lomovskayavirus C31	41491	63.619	Unspecified	Group I	Lomovskayavirus	Lomovskayavirus	Unclassified	Colingsworthviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Lomovskayavirus	Lomovskayavirus C31	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_46