INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_023603 | Mycobacterium phage 39HC | 71565 | 70.003 | Mycobacterium | Group I | Julieunavirus | Julieunavirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_023604 | Mycobacterium phage Jolie2 | 44306 | 68.065 | Mycobacterium | Group I | Jolieduovirus | Jolieduovirus | Gclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.140 | AAI-based (high-confidence) | lytic | ||||
| NC_023605 | Vibrio phage PVA1 | 41529 | 43.697 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio alginolyticus Z1210 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_23;antirepressor orf_43 | |||
| NC_023606 | Mycobacterium phage CRB1 | 52963 | 63.227 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | parA orf_33;immunity orf_73 | |||
| NC_023607 | Mycobacterium phage 40AC | 53396 | 63.338 | Mycobacterium | Group I | Santafevirus | Santafevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | parA orf_36;immunity orf_70 | |||
| NC_023608 | Salmonella phage vB_SenS-Ent2 | 42093 | 49.916 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis | High-quality | High-quality | 98.220 | AAI-based (high-confidence) | lytic | ||||
| NC_023609 | Mycobacterium phage RhynO | 46739 | 65.262 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 92.890 | AAI-based (high-confidence) | temperate | integrase orf_31 | |||
| NC_023610 | Erwinia phage PhiEaH1 | 218339 | 52.341 | Erwinia | Group I | Iapetusvirus | Iapetusvirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora B0.1960 (NCAIM, Hungary) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_023612 | Geobacillus phage GBK2 | 39078 | 43.093 | Geobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Geobacillus kaustophilus ATCC 8005 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_023614 | Croceibacter phage P2559Y | 43153 | 38.922 | Croceibacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Croceibacter atlanticus HTCC2559 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic |