INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_021854 | Lactococcus phage jm3 | 28674 | 34.428 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 94.560 | AAI-based (high-confidence) | lytic | ||||
| NC_021855 | Lactococcus phage phi7 | 32382 | 34.217 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_021856 | Bacillus phage phiNIT1 | 155631 | 42.118 | Bacillus | Group I | Nitunavirus | Nitunavirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus subtilis (natto) | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_021857 | Shigella phage SfII | 41475 | 49.174 | Shigella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_29;cro orf_34 | |||
| NC_021860 | Lactococcus phage jm2 | 31090 | 34.310 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_021861 | Lactococcus phage BM13 | 30910 | 35.988 | Lactococcus | Group I | Vedamuthuvirus | Vedamuthuvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | cro orf_2;antirepressor orf_3;antirepressor orf_5;antirepressor orf_8 | |||
| NC_021862 | Ralstonia phage RSS30 | 8576 | 61.719 | Ralstonia | Group II | Inoviridae | Unclassified | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Ralstonia solanacearum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_021863 | Staphylococcus phage SA13 | 42652 | 35.419 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 99.410 | AAI-based (high-confidence) | temperate | integrase orf_1;antirepressor orf_7;integrase orf_33 | |||
| NC_021864 | Puniceispirillum phage HMO-2011 | 55282 | 43.088 | Puniceispirillum | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Puniceispirillum marinum IMCC1322 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_17 | |||
| NC_021865 | Paenibacillus phage phiIBB_P123 | 41294 | 40.936 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae H23 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_29;antirepressor orf_38 |