INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_019931 | Helicobacter phage KHP40 | 26449 | 35.941 | Helicobacter | Group I | Schmidvirus | Schmidvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Helicobacter pylori strain KMT83 | High-quality | High-quality | 92.050 | AAI-based (high-confidence) | temperate | integrase orf_2 | |||
| NC_019932 | Erwinia phage ENT90 | 29564 | 55.811 | Erwinia | Group I | Entnonagintavirus | Entnonagintavirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora | High-quality | High-quality | 95.890 | AAI-based (high-confidence) | temperate | cro orf_28;integrase orf_29 | |||
| NC_019933 | Xanthomonas phage CP1 | 43870 | 53.310 | Xanthomonas | Group I | Klementvirus | Klementvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas citri | High-quality | High-quality | 99.830 | AAI-based (high-confidence) | temperate | integrase orf_41 | |||
| NC_019934 | Cronobacter phage ENT39118 | 39012 | 53.063 | Cronobacter | Group I | Hendrixvirinae | Unclassified | Hendrixvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | cro orf_39;antirepressor orf_46;integrase orf_49 | |||
| NC_019935 | Pseudomonas phage KPP12 | 64144 | 55.623 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 97.120 | AAI-based (high-confidence) | lytic | ||||
| NC_020077 | Sulfolobus virus STSV2 | 76107 | 35.098 | Sulfolobus | Unclassified | Bicaudaviridae | Unclassified | Unclassified | Bicaudaviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Sulfolobus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_020078 | Cronobacter phage vB_CskP_GAP227 | 41796 | 55.740 | Cronobacter | Group I | Cronosvirus | Cronosvirus | Melnykvirinae | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii strain 51329 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_020079 | Escherichia phage phAPEC8 | 147737 | 39.148 | Escherichia | Group I | Phapecoctavirus | Phapecoctavirus | Stephanstirmvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 97.470 | AAI-based (high-confidence) | lytic | ||||
| NC_020080 | Klebsiella phage KP27 | 174413 | 41.817 | Klebsiella | Group I | Slopekvirus | Slopekvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 97.890 | AAI-based (high-confidence) | lytic | ||||
| NC_020081 | Bacillus phage phiAGATE | 149844 | 40.966 | Bacillus | Group I | Agatevirus | Agatevirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus pumilus GL1 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic |