INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_019417 | Salmonella phage SPN19 | 59203 | 56.524 | Salmonella | Group I | Chivirus | Chivirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella sp. | High-quality | High-quality | 91.850 | AAI-based (high-confidence) | temperate | integrase orf_13 | |||
| NC_019418 | Streptococcus phage phiNJ2 | 37282 | 39.418 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus suis NJ2 serotype 9 | High-quality | High-quality | 96.660 | AAI-based (high-confidence) | lytic | ||||
| NC_019419 | Escherichia phage JL1 | 43457 | 54.774 | Escherichia | Group I | Dhillonvirus | Dhillonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 | High-quality | High-quality | 97.170 | AAI-based (high-confidence) | lytic | ||||
| NC_019420 | Edwardsiella phage KF-1 | 41549 | 48.276 | Edwardsiella | Group I | Kafunavirus | Kafunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.680 | AAI-based (high-confidence) | lytic | ||||
| NC_019421 | Clostridium phage phiMMP02 | 48396 | 29.552 | Clostridium | Group I | Colneyvirus | Colneyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium difficile | High-quality | High-quality | 96.600 | AAI-based (high-confidence) | temperate | integrase orf_41;antirepressor orf_48 | |||
| NC_019422 | Clostridium phage phiMMP04 | 31674 | 29.971 | Clostridium | Group I | Sherbrookevirus | Sherbrookevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium difficile | High-quality | High-quality | 93.180 | AAI-based (high-confidence) | temperate | parA orf_29;cro orf_35;integrase orf_44 | |||
| NC_019423 | Escherichia phage IME11 | 72570 | 43.139 | Escherichia | Group I | Gamaleyavirus | Gamaleyavirus | Enquatrovirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_019442 | Escherichia phage TL-2011c | 60523 | 50.297 | Escherichia | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O103:H25 strain NIPH-11060424/NVH-734 | High-quality | High-quality | 91.800 | AAI-based (high-confidence) | temperate | integrase orf_1;antirepressor orf_9;antirepressor orf_26;cro orf_29;cro orf_30 | |||
| NC_019443 | Synechococcus phage metaG-MbCM1 | 172879 | 39.762 | Synechococcus | Group I | Galenevirus | Galenevirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.000 | AAI-based (high-confidence) | lytic | ||||
| NC_019444 | Synechococcus phage S-MbCM6 | 176043 | 39.119 | Synechococcus | Group I | Namakavirus | Namakavirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic |