INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_013585 | Betafusellovirus yellowstonense | 24186 | 37.695 | Unspecified | Unclassified | Betafusellovirus | Betafusellovirus | Unclassified | Fuselloviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Acidianus brierleyi DSM1651 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_8 | |||
| NC_013587 | Sulfolobus spindle-shaped virus 6 | 15684 | 38.192 | Sulfolobus | Unclassified | Betafusellovirus | Betafusellovirus | Unclassified | Fuselloviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Sulfolobus sp. G4ST-T-11 | Medium-quality | Genome-fragment | 84.440 | AAI-based (high-confidence) | temperate | integrase orf_9 | |||
| NC_013588 | Sulfolobus spindle-shaped virus 7 | 17602 | 38.984 | Sulfolobus | Unclassified | Alphafusellovirus | Alphafusellovirus | Unclassified | Fuselloviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Sulfolobus sp. G4T-1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_6 | |||
| NC_013594 | Escherichia phage D108 | 37235 | 51.760 | Escherichia | Group I | Muvirus | Muvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 96.770 | AAI-based (high-confidence) | temperate | cro orf_1 | |||
| NC_013597 | Aggregatibacter phage S1249 | 43970 | 42.443 | Aggregatibacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aggregatibacter actinomycetemcomitans D11S-1 | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | antirepressor orf_50;integrase orf_60 | |||
| NC_013598 | Streptococcus phage ALQ13.2 | 35525 | 39.395 | Streptococcus | Group I | Brussowvirus | Brussowvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus | High-quality | High-quality | 93.190 | AAI-based (high-confidence) | temperate | cro orf_29;cro orf_31 | |||
| NC_013599 | Xylella phage Xfas53 | 36674 | 56.757 | Xylella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xylella fastidiosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1 | |||
| NC_013600 | Sodalis phage SO-1 | 45169 | 54.582 | Sodalis | Group I | Dhillonvirus | Dhillonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sodalis glossinidius | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_013638 | Pseudomonas phage phi2 | 43144 | 58.914 | Pseudomonas | Group I | Tunggulvirus | Tunggulvirus | Unclassified | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas fluorescens SBW25 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_30 | |||
| NC_013643 | Enterococcus phage phiFL2A | 36270 | 34.607 | Enterococcus | Group I | Phifelvirus | Phifelvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | Medium-quality | Genome-fragment | 87.510 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_3;antirepressor orf_8;cro orf_43 |