Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
JN698990Mycobacterium phage IsaacEli6883966.519MycobacteriumGroup I PegunavirusPegunavirusBclasvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality99.080AAI-based (high-confidence) PegunavirusPegunavirus Pg1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JN698991Mycobacterium phage Hedgerow6745168.955MycobacteriumGroup I RosebushvirusRosebushvirusBclasvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality99.820AAI-based (high-confidence) RosebushvirusRosebushvirus rosebushCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JN698992Mycobacterium phage Gadjet6794967.486MycobacteriumGroup I PipefishvirusPipefishvirusBclasvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality97.350AAI-based (high-confidence) PipefishvirusPipefishvirus gadjetCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JN698993Mycobacterium phage Firecracker7134165.498MycobacteriumGroup I CorndogvirusCorndogvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality99.140AAI-based (high-confidence) CorndogvirusCorndogvirus firecrackerCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JN698994Mycobacterium phage DS6A6058868.438MycobacteriumGroup I HnatkovirusHnatkovirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium tuberculosis mc2 7000High-qualityHigh-quality100.000AAI-based (high-confidence) HnatkovirusHnatkovirus DS6ACurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_55
JN698995Mycobacterium phage Dori6461365.988MycobacteriumGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_44;antirepressor orf_50
JN698996Mycobacterium phage DeadP5646161.552MycobacteriumGroup I CheoctovirusCheoctovirusGracegardnervirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality97.980AAI-based (high-confidence) CheoctovirusCheoctovirus deadpThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_44;immunity orf_46
JN698997Mycobacterium phage Courthouse11056960.922MycobacteriumGroup I OmegavirusOmegavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality99.680AAI-based (high-confidence) OmegavirusOmegavirus courthouseThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_81;immunity orf_185
JN698998Mycobacterium phage Bruns5300363.617MycobacteriumGroup I FromanvirusFromanvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) FromanvirusFromanvirus brunsThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_35;immunity orf_75
JN698999Mycobacterium phage Blue75228861.358MycobacteriumGroup I GladiatorvirusGladiatorvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality99.490AAI-based (high-confidence) GladiatorvirusGladiatorvirus hammerCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateparA orf_32;immunity orf_70
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