INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| JN698990 | Mycobacterium phage IsaacEli | 68839 | 66.519 | Mycobacterium | Group I | Pegunavirus | Pegunavirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.080 | AAI-based (high-confidence) | Pegunavirus | Pegunavirus Pg1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JN698991 | Mycobacterium phage Hedgerow | 67451 | 68.955 | Mycobacterium | Group I | Rosebushvirus | Rosebushvirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.820 | AAI-based (high-confidence) | Rosebushvirus | Rosebushvirus rosebush | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JN698992 | Mycobacterium phage Gadjet | 67949 | 67.486 | Mycobacterium | Group I | Pipefishvirus | Pipefishvirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.350 | AAI-based (high-confidence) | Pipefishvirus | Pipefishvirus gadjet | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JN698993 | Mycobacterium phage Firecracker | 71341 | 65.498 | Mycobacterium | Group I | Corndogvirus | Corndogvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.140 | AAI-based (high-confidence) | Corndogvirus | Corndogvirus firecracker | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JN698994 | Mycobacterium phage DS6A | 60588 | 68.438 | Mycobacterium | Group I | Hnatkovirus | Hnatkovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium tuberculosis mc2 7000 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Hnatkovirus | Hnatkovirus DS6A | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_55 |
| JN698995 | Mycobacterium phage Dori | 64613 | 65.988 | Mycobacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_44;antirepressor orf_50 |
| JN698996 | Mycobacterium phage DeadP | 56461 | 61.552 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.980 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus deadp | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_44;immunity orf_46 |
| JN698997 | Mycobacterium phage Courthouse | 110569 | 60.922 | Mycobacterium | Group I | Omegavirus | Omegavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.680 | AAI-based (high-confidence) | Omegavirus | Omegavirus courthouse | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_81;immunity orf_185 |
| JN698998 | Mycobacterium phage Bruns | 53003 | 63.617 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus bruns | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_35;immunity orf_75 |
| JN698999 | Mycobacterium phage Blue7 | 52288 | 61.358 | Mycobacterium | Group I | Gladiatorvirus | Gladiatorvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.490 | AAI-based (high-confidence) | Gladiatorvirus | Gladiatorvirus hammer | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | parA orf_32;immunity orf_70 |