INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_004996 | Streptococcus phage SM1 | 34692 | 39.150 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus mitis SF100 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_4;antirepressor orf_15;integrase orf_23;integrase orf_32 | |||
| NC_005045 | Pseudomonas phage phiKMV | 42519 | 62.297 | Pseudomonas | Group I | Phikmvvirus | Phikmvvirus | Krylovirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_005056 | Escherichia phage Wphi | 32684 | 51.723 | Escherichia | Group I | Peduovirus | Peduovirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli W strain ATCC9637 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_30;immunity orf_31 | |||
| NC_005066 | Escherichia phage RB49 | 164018 | 40.442 | Escherichia | Group I | Krischvirus | Krischvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 98.440 | AAI-based (high-confidence) | lytic | ||||
| NC_005069 | Yersinia phage PY54 | 46339 | 44.574 | Yersinia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia enterocolitica | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | parA orf_26;antirepressor orf_47 | |||
| NC_005083 | Vibrio phage KVP40 | 244834 | 42.599 | Vibrio | Group I | Schizotequatrovirus | Schizotequatrovirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus | High-quality | High-quality | 90.920 | AAI-based (high-confidence) | lytic | ||||
| NC_005091 | Burkholderia phage BcepNazgul | 57455 | 60.639 | Burkholderia | Group I | Nazgulvirus | Nazgulvirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia cepacia | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_6 | |||
| NC_005131 | Ralstonia phage p12J | 7118 | 56.954 | Ralstonia | Group II | Porrectionivirus | Porrectionivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Ralstonia pickettii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_005135 | Aeromonas phage 44RR2.8t | 173591 | 43.881 | Aeromonas | Group I | Biquartavirus | Biquartavirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas salmonicida | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_005178 | Pseudomonas phage D3112 | 37611 | 64.340 | Pseudomonas | Group I | Casadabanvirus | Casadabanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAS429 | High-quality | High-quality | 98.320 | AAI-based (high-confidence) | temperate | cro orf_1;integrase orf_5 |