INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_004688 | Mycobacterium phage Omega | 110865 | 61.375 | Mycobacterium | Group I | Omegavirus | Omegavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium | High-quality | High-quality | 99.990 | AAI-based (high-confidence) | temperate | integrase orf_82 | |||
| NC_004689 | Mycobacterium phage Barnyard | 70797 | 57.313 | Mycobacterium | Group I | Barnyardvirus | Barnyardvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_004735 | Rhodothermus phage RM378 | 129908 | 42.494 | Rhodothermus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodothermus marinus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_004736 | Vibrio phage VGJ | 7542 | 43.370 | Vibrio | Group II | Fibrovirus | Fibrovirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Vibrio cholerae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_004740 | Staphylococcus phage phiN315 | 44082 | 32.778 | Staphylococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus N315 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_7;antirepressor orf_11;integrase orf_33 | |||
| NC_004745 | Yersinia phage L-413C | 30728 | 52.106 | Yersinia | Group I | Peduovirus | Peduovirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pestis | High-quality | High-quality | 95.570 | AAI-based (high-confidence) | temperate | integrase orf_29 | |||
| NC_004746 | Lactococcus phage 4268 | 36596 | 35.367 | Lactococcus | Group I | Sandinevirus | Sandinevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | cro orf_2;antirepressor orf_3;cro orf_8 | |||
| NC_004775 | Salmonella phage epsilon15 | 39672 | 50.834 | Salmonella | Group I | Uetakevirus | Uetakevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | High-quality | High-quality | 99.260 | AAI-based (high-confidence) | temperate | integrase orf_28 | |||
| NC_004777 | Yersinia phage phiA1122 | 37555 | 48.316 | Yersinia | Group I | Teseptimavirus | Teseptimavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pestis | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_004813 | Enterobacteria phage BP-4795 | 57930 | 50.608 | Enterobacteria | Group I | Marienburgvirus | Marienburgvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_21;cro orf_22;antirepressor orf_47 |