INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_003288 | Staphylococcus phage phiETA | 43081 | 35.431 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus E-1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_6;cro orf_7;antirepressor orf_11;integrase orf_36 | |||
| NC_003291 | Listeria phage PSA | 37618 | 34.725 | Listeria | Group I | Psavirus | Psavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Listeria monocytogenes ScottA | High-quality | High-quality | 99.210 | AAI-based (high-confidence) | temperate | integrase orf_26;cro orf_29 | |||
| NC_003298 | Enterobacteria phage T3 | 38208 | 49.901 | Enterobacteria | Group I | Teetrevirus | Teetrevirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_003299 | Pseudomonas phage phi8 | 7051 | 54.021 | Pseudomonas | Group III | Alphacystovirus | Alphacystovirus | Unclassified | Cystoviridae | Mindivirales | Vidaverviricetes | Duplornaviricota | Orthornavirae | Riboviria | Pseudomonas syringae | Not-determined | Genome-fragment | unknown | ||||||
| NC_003300 | Pseudomonas phage phi8 | 4741 | 55.263 | Pseudomonas | Group III | Alphacystovirus | Alphacystovirus | Unclassified | Cystoviridae | Mindivirales | Vidaverviricetes | Duplornaviricota | Orthornavirae | Riboviria | Pseudomonas syringae | Not-determined | Genome-fragment | unknown | ||||||
| NC_003301 | Pseudomonas phage phi8 | 3192 | 54.449 | Pseudomonas | Group III | Alphacystovirus | Alphacystovirus | Unclassified | Cystoviridae | Mindivirales | Vidaverviricetes | Duplornaviricota | Orthornavirae | Riboviria | Pseudomonas syringae | Low-quality | Genome-fragment | 7.560 | AAI-based (medium-confidence) | unknown | ||||
| NC_003309 | Burkholderia phage phiE125 | 53373 | 61.192 | Burkholderia | Group I | Stanholtvirus | Stanholtvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia thailandensis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_003311 | Vibrio phage VSKK | 6834 | 43.503 | Vibrio | Group II | Fibrovirus | Fibrovirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Vibrio cholerae O139 strain BO4 | High-quality | High-quality | 96.470 | AAI-based (high-confidence) | lytic | ||||
| NC_003313 | Bacteriophage K139 | 33106 | 48.897 | Unspecified | Group I | Longwoodvirus | Longwoodvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae O139 | High-quality | High-quality | 96.960 | AAI-based (high-confidence) | temperate | integrase orf_1 | |||
| NC_003315 | Haemophilus phage HP2 | 31508 | 39.936 | Haemophilus | Group I | Hpunavirus | Hpunavirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Haemophilus influenzae | High-quality | High-quality | 99.450 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_4 |