INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_000902 | Enterobacteria phage VT2-Sakai | 60942 | 49.913 | Enterobacteria | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 | High-quality | High-quality | 92.920 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_26;antirepressor orf_37;antirepressor orf_50;antirepressor orf_85 | |||
| NC_000924 | Escherichia phage 933W | 61670 | 49.368 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 EDL933 | High-quality | High-quality | 94.160 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_28;cro orf_29;antirepressor orf_53;antirepressor orf_87 | |||
| NC_000929 | Escherichia phage Mu | 36717 | 52.055 | Escherichia | Group I | Muvirus | Muvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 95.410 | AAI-based (high-confidence) | lytic | ||||
| NC_000935 | Hamiltonella phage APSE-1 | 36524 | 43.886 | Hamiltonella | Group I | Sendosyvirus | Sendosyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Endosymbiont | High-quality | High-quality | 95.900 | AAI-based (high-confidence) | temperate | integrase orf_27 | |||
| NC_001270 | Spiroplasma phage SVTS2 | 6825 | 22.652 | Spiroplasma | Group II | Suturavirus | Suturavirus | Unclassified | Plectroviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Spiroplasma | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_001271 | Yersinia phage phiYeO3-12 | 39600 | 50.631 | Yersinia | Group I | Teetrevirus | Teetrevirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia enterocolitica (type O:3) | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_001317 | Escherichia phage 186 | 30624 | 53.086 | Escherichia | Group I | Eganvirus | Eganvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 96.650 | AAI-based (high-confidence) | temperate | integrase orf_28;cro orf_29 | |||
| NC_001330 | Escherichia phage alpha3 | 6087 | 45.178 | Escherichia | Group II | Alphatrevirus | Alphatrevirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Escherichia coli | High-quality | High-quality | 99.970 | AAI-based (high-confidence) | lytic | ||||
| NC_001331 | Primolicivirus Pf1 | 7349 | 61.491 | Unspecified | Group II | Primolicivirus | Primolicivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Pseudomonas aeruginosa | Medium-quality | Genome-fragment | 68.840 | AAI-based (high-confidence) | lytic | ||||
| NC_001332 | Lineavirus I22 | 6744 | 42.719 | Unspecified | Group II | Lineavirus | Lineavirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Escherichia coli | Medium-quality | Genome-fragment | 89.800 | AAI-based (high-confidence) | lytic |