INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HQ110083 | Cronobacter phage ESSI-2 | 28765 | 55.168 | Cronobacter | Group I | Seongnamvirus | Seongnamvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii | High-quality | High-quality | 97.890 | AAI-based (high-confidence) | Seongnamvirus | Seongnamvirus ESSI2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_36 |
| HQ110084 | Erwinia phage ENT90 | 29564 | 55.811 | Erwinia | Group I | Entnonagintavirus | Entnonagintavirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora | High-quality | High-quality | 95.890 | AAI-based (high-confidence) | Entnonagintavirus | Entnonagintavirus ENT90 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_28;integrase orf_29 |
| HQ127381 | Staphylococcus phage TEM126 | 41882 | 33.676 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 97.150 | AAI-based (high-confidence) | Dubowvirus | Dubowvirus TEM126 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_12;integrase orf_45;cro orf_49;cro orf_50;antirepressor orf_51;integrase orf_60 |
| HQ141410 | Lactobacillus phage LF1 | 42606 | 45.005 | Lactobacillus | Group I | Lafunavirus | Lafunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lafunavirus | Lafunavirus LF1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_26;antirepressor orf_37 |
| HQ141411 | Lactobacillus phage Sha1 | 41726 | 40.605 | Lactobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_35;cro orf_41;antirepressor orf_42 |
| HQ163896 | Staphylococcus aureus bacteriophage Sb-1 | 127188 | 30.475 | Staphylococcus | Group I | Kayvirus | Kayvirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | Medium-quality | Genome-fragment | 89.820 | AAI-based (high-confidence) | Kayvirus | Kayvirus Sb1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ186308 | Acinetobacter phage phiAB1 | 41526 | 39.086 | Acinetobacter | Group I | Friunavirus | Friunavirus | Beijerinckvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii M68316 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Friunavirus | Friunavirus AB1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HQ201307 | Cronobacter phage ENT39118 | 39012 | 53.063 | Cronobacter | Group I | Hendrixvirinae | Unclassified | Hendrixvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | cro orf_39;antirepressor orf_46;integrase orf_49 |
| HQ201308 | Cronobacter phage ENT47670 | 47611 | 51.593 | Cronobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_6;cro orf_14;antirepressor orf_52;cro orf_53 |
| HQ224500 | Vibrio phage CTXphi | 10638 | 44.623 | Vibrio | Group II | Affertcholeramvirus | Affertcholeramvirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Vibrio cholerae KMN002 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |