INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HM480846 | Escherichia phage K30 | 40940 | 51.426 | Escherichia | Group I | Przondovirus | Przondovirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Przondovirus | Przondovirus K30 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HM486077 | Tsukamurella phage TPA2 | 61440 | 69.574 | Tsukamurella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Tsukamurella paurometabola | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| HM559717 | Synechococcus phage S-CBP4 | 41824 | 44.293 | Synechococcus | Group I | Poseidonvirus | Poseidonvirus | Sechaudvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. CB0101 | High-quality | High-quality | 93.440 | AAI-based (high-confidence) | Poseidonvirus | Poseidonvirus SCBP4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HM563683 | Escherichia phage vB_EcoM_VR7 | 169285 | 40.333 | Escherichia | Group I | Gaprivervirus | Gaprivervirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 99.540 | AAI-based (high-confidence) | Gaprivervirus | Gaprivervirus vr7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_142 |
| HM568888 | Clostridium phage phiCD38-2 | 41090 | 30.830 | Clostridium | Group I | Leicestervirus | Leicestervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium difficile | High-quality | High-quality | 98.880 | AAI-based (high-confidence) | Leicestervirus | Leicestervirus CD382 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | parA orf_30;cro orf_35;integrase orf_48 |
| HM588722 | Pseudoalteromonas phage H105/1 | 30651 | 40.821 | Pseudoalteromonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudoalteromonas sp. H105 | Medium-quality | Genome-fragment | 81.240 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| HM596271 | Leuconostoc phage phiMH1 | 38709 | 38.678 | Leuconostoc | Group I | Seongbukvirus | Seongbukvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leuconostoc pseudomesenteroides KD04 | Medium-quality | Genome-fragment | 65.710 | HMM-based (lower-bound) | Seongbukvirus | Seongbukvirus MH1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_5;integrase orf_60 |
| HM624080 | Pseudomonas phage PA1/KOR/2010 | 34553 | 64.767 | Pseudomonas | Group I | Casadabanvirus | Casadabanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 90.010 | AAI-based (high-confidence) | Casadabanvirus | Casadabanvirus PA1KOR | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1 |
| HM640230 | Clostridium phage CpV1 | 16748 | 30.505 | Clostridium | Group I | Capvunavirus | Capvunavirus | Denniswatsonvirinae | Guelinviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium perfringens | Complete | High-quality | 100.000 | ITR (high-confidence) | Capvunavirus | Capvunavirus CpV1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HM753658 | Escherichia phage phiX174 | 5386 | 44.727 | Escherichia | Group II | Sinsheimervirus | Sinsheimervirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Escherichia coli | High-quality | High-quality | 91.680 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown |