Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
HM480846Escherichia phage K304094051.426EscherichiaGroup I PrzondovirusPrzondovirusStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedCompleteHigh-quality100.000DTR (high-confidence) PrzondovirusPrzondovirus K30Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
HM486077Tsukamurella phage TPA26144069.574TsukamurellaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Tsukamurella paurometabolaHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
HM559717Synechococcus phage S-CBP44182444.293SynechococcusGroup I PoseidonvirusPoseidonvirusSechaudvirinaeUnclassifiedAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Synechococcus sp. CB0101High-qualityHigh-quality93.440AAI-based (high-confidence) PoseidonvirusPoseidonvirus SCBP4Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
HM563683Escherichia phage vB_EcoM_VR716928540.333EscherichiaGroup I GaprivervirusGaprivervirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliHigh-qualityHigh-quality99.540AAI-based (high-confidence) GaprivervirusGaprivervirus vr7Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperatecro orf_142
HM568888Clostridium phage phiCD38-24109030.830ClostridiumGroup I LeicestervirusLeicestervirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Clostridium difficileHigh-qualityHigh-quality98.880AAI-based (high-confidence) LeicestervirusLeicestervirus CD382Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateparA orf_30;cro orf_35;integrase orf_48
HM588722Pseudoalteromonas phage H105/13065140.821PseudoalteromonasGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudoalteromonas sp. H105Medium-qualityGenome-fragment81.240AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
HM596271Leuconostoc phage phiMH13870938.678LeuconostocGroup I SeongbukvirusSeongbukvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Leuconostoc pseudomesenteroides KD04Medium-qualityGenome-fragment65.710HMM-based (lower-bound) SeongbukvirusSeongbukvirus MH1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_5;integrase orf_60
HM624080Pseudomonas phage PA1/KOR/20103455364.767PseudomonasGroup I CasadabanvirusCasadabanvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaHigh-qualityHigh-quality90.010AAI-based (high-confidence) CasadabanvirusCasadabanvirus PA1KORCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1
HM640230Clostridium phage CpV11674830.505ClostridiumGroup I CapvunavirusCapvunavirusDenniswatsonvirinaeGuelinviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Clostridium perfringensCompleteHigh-quality100.000ITR (high-confidence) CapvunavirusCapvunavirus CpV1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
HM753658Escherichia phage phiX174538644.727EscherichiaGroup II SinsheimervirusSinsheimervirusUnclassifiedEubullaviridaeBullaviralesMicroviricetesPhixviricotaSangerviraeFloreoviria Escherichia coliHigh-qualityHigh-quality91.680AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingsunknown
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