INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HM137666 | Enterobacteria phage T4T | 168920 | 35.291 | Enterobacteria | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus T4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HM144385 | Brochothrix phage NF5 | 36953 | 37.296 | Brochothrix | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brochothrix thermosphacta | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_26;antirepressor orf_30 |
| HM144386 | Brochothrix phage BL3 | 41518 | 36.377 | Brochothrix | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brochothrix thermosphacta | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_32 |
| HM144387 | Bacillus phage W.Ph. | 156897 | 36.447 | Bacillus | Group I | Wphvirus | Wphvirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus | High-quality | High-quality | 98.130 | AAI-based (high-confidence) | Wphvirus | Wphvirus WPh | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| HM150760 | Stenotrophomonas phage phiSHP2 | 5819 | 61.505 | Stenotrophomonas | Group II | Siphunculivirus | Siphunculivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Stenotrophomonas maltophilia | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| HM151342 | Roseobacter phage RDJL Phi 1 | 62668 | 57.881 | Roseobacter | Group I | Xiamenvirus | Xiamenvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Roseobacter denitrificans OCh114 | High-quality | High-quality | 99.400 | AAI-based (high-confidence) | Xiamenvirus | Xiamenvirus RDJL1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| HM152763 | Mycobacterium phage LeBron | 73453 | 58.835 | Mycobacterium | Group I | Bronvirus | Bronvirus | Lclasvirinae | Vilmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.150 | AAI-based (high-confidence) | Bronvirus | Bronvirus bron | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_34 |
| HM152764 | Mycobacterium phage Angelica | 59598 | 66.388 | Mycobacterium | Group I | Anayavirus | Anayavirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.380 | AAI-based (high-confidence) | Anayavirus | Anayavirus angelica | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_40;immunity orf_42 |
| HM152765 | Mycobacterium phage Island3 | 47287 | 66.794 | Mycobacterium | Group I | Brujitavirus | Brujitavirus | Chebruvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.560 | AAI-based (high-confidence) | Brujitavirus | Brujitavirus brujita | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_33;antirepressor orf_35 |
| HM152766 | Mycobacterium phage Eagle | 51436 | 63.874 | Mycobacterium | Group I | Backyardiganvirus | Backyardiganvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Backyardiganvirus | Backyardiganvirus bellusterra | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_31;immunity orf_64 |