INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message ▲	PhageLeads lifestyle	PhageLeads problematic genes
AB008550	Pseudomonas phage phiCTX	35580	62.622	Pseudomonas	Group I	Citexvirus	Citexvirus	Unclassified	Peduoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa (strain PA158)	Complete	High-quality	100.000	DTR (high-confidence)	Citexvirus	Citexvirus phiCTX	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_44
AB016282	Bacillus phage phi105	39325	42.690	Bacillus	Group I	Spizizenvirus	Spizizenvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	99.630	AAI-based (high-confidence)	Spizizenvirus	Spizizenvirus sv105	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_34;immunity orf_36
AB231700	Microcystis phage LMM01	162109	45.953	Microcystis	Group I	Fukuivirus	Fukuivirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	95.800	AAI-based (high-confidence)	Fukuivirus	Fukuivirus LMM01	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_9;antirepressor orf_23;integrase orf_176
AB255436	Stx2-converting phage 86	60238	49.067	Unspecified	Group I	Traversvirus	Traversvirus	Sepvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O86:H-, strain DIJ1	High-quality	High-quality	91.800	AAI-based (high-confidence)	Traversvirus	Traversvirus tv86	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_8;integrase orf_35;antirepressor orf_41;cro orf_64;cro orf_65
AB276040	Ralstonia phage RSA1	38760	65.348	Ralstonia	Group I	Aresaunavirus	Aresaunavirus	Unclassified	Peduoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	98.760	AAI-based (high-confidence)	Aresaunavirus	Aresaunavirus RSA1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_52
AB366653	Ralstonia phage phiRSL1	231255	58.026	Ralstonia	Group I	Mieseafarmvirus	Mieseafarmvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Mieseafarmvirus	Mieseafarmvirus RSL1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
AB374228	Vibrio phage Kappa	33507	48.835	Vibrio	Group I	Longwoodvirus	Longwoodvirus	Unclassified	Peduoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	98.130	AAI-based (high-confidence)	Longwoodvirus	Longwoodvirus K139	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_1
AB451219	Ralstonia phage RSB1	43079	61.738	Ralstonia	Group I	Higashivirus	Higashivirus	Okabevirinae	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Ralstonia solanacearum	High-quality	High-quality	100.000	AAI-based (high-confidence)	Higashivirus	Higashivirus RSB1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
AB472900	Pseudomonas phage KPP10	88322	54.794	Pseudomonas	Group I	Nankokuvirus	Nankokuvirus	Unclassified	Vandenendeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Nankokuvirus	Nankokuvirus KPP10	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
AB560486	Pseudomonas phage KPP12	64144	55.623	Pseudomonas	Group I	Pbunavirus	Pbunavirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	97.120	AAI-based (high-confidence)	Pbunavirus	Pbunavirus KPP12	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic