INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus ▲	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MH059632	Dickeya phage Dagda	40484	48.113	Dickeya	Group I	Aarhusvirus	Aarhusvirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Dickeya solani	High-quality	High-quality	99.760	AAI-based (high-confidence)	Aarhusvirus	Aarhusvirus dagda	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH807810	Dickeya phage Dagda_B1	40484	48.113	Dickeya	Group I	Aarhusvirus	Aarhusvirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Dickeya solani DSM28711	High-quality	High-quality	99.760	AAI-based (high-confidence)	Aarhusvirus	Aarhusvirus dagda	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH807813	Dickeya phage Katbat	40441	48.038	Dickeya	Group I	Aarhusvirus	Aarhusvirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Dickeya solani DSM28711	High-quality	High-quality	99.650	AAI-based (high-confidence)	Aarhusvirus	Aarhusvirus katbat	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH807815	Dickeya phage Luksen	40729	48.214	Dickeya	Group I	Aarhusvirus	Aarhusvirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Dickeya solani DSM28711	High-quality	High-quality	100.000	AAI-based (high-confidence)	Aarhusvirus	Aarhusvirus luksen	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH807817	Dickeya phage Mysterion	40651	48.110	Dickeya	Group I	Aarhusvirus	Aarhusvirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Dickeya solani DSM28711	High-quality	High-quality	100.000	AAI-based (high-confidence)	Aarhusvirus	Aarhusvirus mysterion	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KX669658	Ochrobactrum phage POA1180	41655	56.615	Ochrobactrum	Group I	Abaiavirus	Abaiavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Ochrobactrum anthropi	High-quality	High-quality	100.000	AAI-based (high-confidence)	Abaiavirus	Abaiavirus POA1180	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG593800	Streptomyces phage AbbeyMikolon	42551	66.826	Streptomyces	Group I	Abbeymikolonvirus	Abbeymikolonvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces lividans JI 1326	High-quality	High-quality	100.000	AAI-based (high-confidence)	Abbeymikolonvirus	Abbeymikolonvirus abbeymikolon	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	immunity orf_26;integrase orf_54
MH001457	Streptomyces phage Nesbitt	42446	66.831	Streptomyces	Group I	Abbeymikolonvirus	Abbeymikolonvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces lividans JI 1326	High-quality	High-quality	99.750	AAI-based (high-confidence)	Abbeymikolonvirus	Abbeymikolonvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	immunity orf_26;integrase orf_54
JQ067087	Pseudomonas phage PaMx11	59878	64.453	Pseudomonas	Group I	Abidjanvirus	Abidjanvirus	Bradleyvirinae	Mesyanzhinovviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	98.050	AAI-based (high-confidence)	Abidjanvirus	Abidjanvirus PaMx11	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU356689	Pseudomonas phage ZC01	57061	63.381	Pseudomonas	Group I	Abidjanvirus	Abidjanvirus	Bradleyvirinae	Mesyanzhinovviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	93.460	AAI-based (high-confidence)	Abidjanvirus	Abidjanvirus ZC01	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic