INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family ▲ | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| FJ373894 | Shigella phage Ag3 | 158006 | 50.398 | Shigella | Group I | Agtrevirus | Agtrevirus | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella boydii | High-quality | High-quality | 99.990 | AAI-based (high-confidence) | Agtrevirus | Agtrevirus AG3 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| HE600015 | Dickeya phage vB-DsoM-LIMEstone1 | 152427 | 49.279 | Dickeya | Group I | Limestonevirus | Limestonevirus | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dickeya solani | High-quality | High-quality | 96.530 | AAI-based (high-confidence) | Limestonevirus | Limestonevirus limestone | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| JX181829 | Salmonella phage SKML-39 | 159624 | 50.154 | Salmonella | Group I | Agtrevirus | Agtrevirus | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Agtrevirus | Agtrevirus SKML39 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KJ716335 | Dickeya phage RC-2014 | 155346 | 49.649 | Dickeya | Group I | Limestonevirus | Limestonevirus | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dickeya sp. | High-quality | High-quality | 98.380 | AAI-based (high-confidence) | Limestonevirus | Limestonevirus RC2014 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KM209228 | Dickeya phage phiD3 | 152308 | 49.357 | Dickeya | Group I | Limestonevirus | Limestonevirus | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium sp. and Dickeya sp. | Complete | High-quality | 100.000 | DTR (high-confidence) | Limestonevirus | Limestonevirus limestone | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KM209270 | Dickeya phage phiDP10.3 | 129650 | 49.766 | Dickeya | Group I | Aglimvirinae | Unclassified | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium sp. and Dickeya sp. | Medium-quality | Genome-fragment | 82.100 | AAI-based (high-confidence) | Limestonevirus | Limestonevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KM209271 | Dickeya phage phiDP10.3 | 27033 | 48.530 | Dickeya | Group I | Aglimvirinae | Unclassified | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium sp. and Dickeya sp. | Low-quality | Genome-fragment | 17.120 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| KM209294 | Dickeya phage phiDP23.1 | 12099 | 50.459 | Dickeya | Group I | Aglimvirinae | Unclassified | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium sp. and Dickeya sp. | Low-quality | Genome-fragment | 7.710 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | unknown | |
| KM209320 | Dickeya phage phiDP23.1 | 150933 | 49.329 | Dickeya | Group I | Aglimvirinae | Unclassified | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium sp. and Dickeya sp. | High-quality | High-quality | 95.570 | AAI-based (high-confidence) | Limestonevirus | Limestonevirus limestone | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KY942056 | Dickeya phage JA15 | 153757 | 49.200 | Dickeya | Group I | Limestonevirus | Limestonevirus | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dickeya solani | High-quality | High-quality | 97.370 | AAI-based (high-confidence) | Limestonevirus | Limestonevirus limestone | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic |