INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum ▲ | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AB063393 | Thermus virus IN93 | 19604 | 65.936 | Thermus | Group I | Hukuchivirus | Hukuchivirus | Unclassified | Matsushitaviridae | Halopanivirales | Laserviricetes | Dividoviricota | Helvetiavirae | Singelaviria | Thermus thermophilus TZ2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Hukuchivirus | Hukuchivirus IN93 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;integrase orf_32 |
| AY048850 | Saline Natrinema sp. J7-1 virus 1 | 16492 | 61.114 | Natrinema | Group I | Yingchengvirus | Yingchengvirus | Unclassified | Simuloviridae | Halopanivirales | Laserviricetes | Dividoviricota | Helvetiavirae | Singelaviria | Natrinema sp. J7-1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AY950802 | Haloarcula hispanica SH1 virus | 30889 | 68.384 | Haloarcula | Group I | Alphasphaerolipovirus | Alphasphaerolipovirus | Unclassified | Sphaerolipoviridae | Halopanivirales | Laserviricetes | Dividoviricota | Helvetiavirae | Singelaviria | Haloarcula hispanica | Complete | High-quality | 100.000 | ITR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| BK013337 | Natrinema versiforme icosahedral virus 1 | 18925 | 63.530 | Natrinema | Group I | Yingchengvirus | Yingchengvirus | Unclassified | Simuloviridae | Halopanivirales | Laserviricetes | Dividoviricota | Helvetiavirae | Singelaviria | Natrinema versiforme strain BOL5-4 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| BK013338 | Haloterrigena jeotgali icosahedral virus 1 | 17189 | 63.989 | Haloterrigena | Group I | Yingchengvirus | Yingchengvirus | Unclassified | Simuloviridae | Halopanivirales | Laserviricetes | Dividoviricota | Helvetiavirae | Singelaviria | Haloterrigena jeotgali strain A29 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| GQ403789 | Thermus phage P23-77 | 17036 | 67.950 | Thermus | Group I | Hukuchivirus | Hukuchivirus | Unclassified | Matsushitaviridae | Halopanivirales | Laserviricetes | Dividoviricota | Helvetiavirae | Singelaviria | Thermus thermophilus | Complete | High-quality | 100.000 | DTR (high-confidence) | Hukuchivirus | Hukuchivirus P2377 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| JN968479 | Haloarcula hispanica icosahedral virus 2 | 30578 | 66.515 | Haloarcula | Group I | Alphasphaerolipovirus | Alphasphaerolipovirus | Unclassified | Sphaerolipoviridae | Halopanivirales | Laserviricetes | Dividoviricota | Helvetiavirae | Singelaviria | Haloarcula hispanica | Complete | High-quality | 100.000 | ITR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KC252997 | Haloarcula hispanica virus PH1 | 28072 | 67.640 | Haloarcula | Group I | Alphasphaerolipovirus | Alphasphaerolipovirus | Unclassified | Sphaerolipoviridae | Halopanivirales | Laserviricetes | Dividoviricota | Helvetiavirae | Singelaviria | Haloarcula hispanica ATCC 33960 | Complete | High-quality | 100.000 | ITR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KT809302 | Haloarcula californiae icosahedral virus 1 | 31314 | 68.126 | Haloarcula | Group I | Alphasphaerolipovirus | Alphasphaerolipovirus | Unclassified | Sphaerolipoviridae | Halopanivirales | Laserviricetes | Dividoviricota | Helvetiavirae | Singelaviria | Haloarcula californiae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| NC_003158 | Saline Natrinema sp. J7-1 virus 1 | 16492 | 61.114 | Natrinema | Group I | Yingchengvirus | Yingchengvirus | Unclassified | Simuloviridae | Halopanivirales | Laserviricetes | Dividoviricota | Helvetiavirae | Singelaviria | Natrinema sp. J7-1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic |