INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession | Description | Genome Length (bp) | molGC (%) ▲ | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MW358880 | Mycoplasma phage MGyu-2021a | 24404 | 22.070 | Mycoplasma | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Mycoplasma anserisalpingitidis | Not-determined | Genome-fragment | New_genus | New_species | No hits were found with the default settings | lytic | |||
| EF506570 | Spiroplasma phage SkV1CR23x | 7870 | 22.211 | Spiroplasma | Group II | Vespertiliovirus | Vespertiliovirus | Unclassified | Plectroviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Unspecified | High-quality | High-quality | 99.040 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| NC_009987 | Vespertiliovirus SkV1CR23x | 7870 | 22.211 | Unspecified | Group II | Vespertiliovirus | Vespertiliovirus | Unclassified | Plectroviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Spiroplasma kunkelii | High-quality | High-quality | 99.040 | AAI-based (high-confidence) | lytic | ||||
| AF133242 | Spiroplasma phage SVTS2 | 6825 | 22.652 | Spiroplasma | Group II | Suturavirus | Suturavirus | Unclassified | Plectroviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| NC_001270 | Spiroplasma phage SVTS2 | 6825 | 22.652 | Spiroplasma | Group II | Suturavirus | Suturavirus | Unclassified | Plectroviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Spiroplasma | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| MW353169 | Mycoplasma phage sp. | 59948 | 22.765 | Mycoplasma | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Mycoplasma anserisalpingitidis MYCAV94 | High-quality | High-quality | 100.000 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| NC_001365 | Spiroplasma phage R8A2B | 8273 | 22.894 | Spiroplasma | Group II | Vespertiliovirus | Vespertiliovirus | Unclassified | Plectroviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Spiroplasma citri | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| X51344 | Spiroplasma phage R8A2B | 8273 | 22.894 | Spiroplasma | Group II | Vespertiliovirus | Vespertiliovirus | Unclassified | Plectroviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AJ969242 | Spiroplasma phage SVGII3 | 7878 | 23.013 | Spiroplasma | Group II | Virgulavirus | Virgulavirus | Unclassified | Plectroviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Circulifer haematoceps | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| NC_073761 | Spiroplasma phage SVGII3 | 7878 | 23.013 | Spiroplasma | Group II | Virgulavirus | Virgulavirus | Unclassified | Plectroviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Circulifer haematoceps | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | lytic |