INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession | Description | Genome Length (bp) ▲ | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OL963532 | Lactobacillus phage ADMH1Phi3 | 1761 | 45.031 | Lactobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lacticaseibacillus casei | Low-quality | Genome-fragment | 4.320 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | unknown | |
| MW202694 | Inoviridae sp. | 1881 | 51.249 | Unspecified | Group II | Inoviridae | Unclassified | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Unspecified | Not-determined | Genome-fragment | New_genus | New_species | No hits were found with the default settings | unknown | |||
| OM869672 | Peromfec virus RodF5_41 | 2088 | 53.161 | Unspecified | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Peromyscus truei; specimen_voucher: UMNH:Mamm:44820; Tissue Sample Catalog Number: ASUVTC000566 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| OL963531 | Lactobacillus phage ADMH18Phi4 | 2270 | 45.551 | Lactobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Limosilactobacillus fermentum | Low-quality | Genome-fragment | 5.740 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | unknown | |
| NC_004174 | Pseudomonas phage phi12 | 2322 | 56.977 | Pseudomonas | Group III | Betacystovirus | Betacystovirus | Unclassified | Cystoviridae | Mindivirales | Vidaverviricetes | Duplornaviricota | Orthornavirae | Riboviria | Pseudomonas syringae | Low-quality | Genome-fragment | 17.600 | AAI-based (high-confidence) | unknown | ||||
| L06183 | Leuconostoc phage L5 | 2435 | 33.265 | Leuconostoc | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leuconostoc oenos | |||||||||
| NC_003714 | Pseudomonas phage phi6 | 2948 | 55.156 | Pseudomonas | Group III | Orthocystovirus | Orthocystovirus | Unclassified | Cystoviridae | Mindivirales | Vidaverviricetes | Duplornaviricota | Orthornavirae | Riboviria | Pseudomonas syringae pv. phaseolicola | Low-quality | Genome-fragment | 22.080 | AAI-based (high-confidence) | unknown | ||||
| NC_004170 | Pseudomonas phage phi13 | 2981 | 56.189 | Pseudomonas | Group III | Gammacystovirus | Gammacystovirus | Unclassified | Cystoviridae | Mindivirales | Vidaverviricetes | Duplornaviricota | Orthornavirae | Riboviria | Pseudomonas syringae | Low-quality | Genome-fragment | 21.800 | AAI-based (high-confidence) | unknown | ||||
| BK061430 | Microviridae sp. | 2991 | 56.169 | Unspecified | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | Low-quality | Genome-fragment | 8.960 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MW202783 | Inoviridae sp. | 3063 | 46.490 | Unspecified | Group II | Inoviridae | Unclassified | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Unspecified | Not-determined | Genome-fragment | New_genus | New_species | No hits were found with the default settings | unknown |