Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family ▲ Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
AB797215Klebsiella phage 0507-KN2-115999146.705KlebsiellaGroup I TaipeivirusTaipeivirusUnclassifiedAckermannviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality100.000AAI-based (high-confidence) TaipeivirusTaipeivirus 0507KN21Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
FJ373894Shigella phage Ag315800650.398ShigellaGroup I AgtrevirusAgtrevirusAglimvirinaeAckermannviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Shigella boydiiHigh-qualityHigh-quality99.990AAI-based (high-confidence) AgtrevirusAgtrevirus AG3The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
FQ312032Salmonella phage Vi0115706145.220SalmonellaGroup I KuttervirusKuttervirusCvivirinaeAckermannviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella enterica subsp. enterica serovar TyphiHigh-qualityHigh-quality99.390AAI-based (high-confidence) KuttervirusKuttervirus ViICurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
HE600015Dickeya phage vB-DsoM-LIMEstone115242749.279DickeyaGroup I LimestonevirusLimestonevirusAglimvirinaeAckermannviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Dickeya solaniHigh-qualityHigh-quality96.530AAI-based (high-confidence) LimestonevirusLimestonevirus limestoneThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
HQ259103Salmonella phage SFP1015795044.534SalmonellaGroup I KuttervirusKuttervirusCvivirinaeAckermannviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella sp. and Escherichia coli O157High-qualityHigh-quality99.930AAI-based (high-confidence) KuttervirusKuttervirus SFP10Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JN126049Salmonella typhimurium phage PhiSH1915778544.685SalmonellaGroup I KuttervirusKuttervirusCvivirinaeAckermannviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella typhimuriumHigh-qualityHigh-quality99.830AAI-based (high-confidence) KuttervirusKuttervirus SH19Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JN593240Escherichia phage Cba12015730444.499EscherichiaGroup I KuttervirusKuttervirusCvivirinaeAckermannviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli; O157:H7; NCTC 12900High-qualityHigh-quality99.520AAI-based (high-confidence) KuttervirusKuttervirus CBA120Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JN673056Escherichia phage PhaxI15662844.533EscherichiaGroup I KuttervirusKuttervirusCvivirinaeAckermannviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli O157:H7High-qualityHigh-quality99.090AAI-based (high-confidence) KuttervirusKuttervirus PhaxICurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JX128257Escherichia phage ECML-415730845.032EscherichiaGroup I KuttervirusKuttervirusCvivirinaeAckermannviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli O157:H7CompleteHigh-quality100.000DTR (high-confidence) KuttervirusKuttervirus ECML4Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
JX181828Salmonella phage STML-13-115723544.782SalmonellaGroup I KuttervirusKuttervirusCvivirinaeAckermannviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality99.500AAI-based (high-confidence) KuttervirusKuttervirus STML131Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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