INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group ▲ | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AB008550 | Pseudomonas phage phiCTX | 35580 | 62.622 | Pseudomonas | Group I | Citexvirus | Citexvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa (strain PA158) | Complete | High-quality | 100.000 | DTR (high-confidence) | Citexvirus | Citexvirus phiCTX | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_44 |
| AB009866 | Staphylococcus phage PVL | 41401 | 33.555 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus ATCC 49775 | High-quality | High-quality | 97.650 | AAI-based (high-confidence) | Peeveelvirus | Peeveelvirus PVL | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_30;cro orf_33;antirepressor orf_37 |
| AB016282 | Bacillus phage phi105 | 39325 | 42.690 | Bacillus | Group I | Spizizenvirus | Spizizenvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.630 | AAI-based (high-confidence) | Spizizenvirus | Spizizenvirus sv105 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_34;immunity orf_36 |
| AB036666 | Wolbachia phage WO | 32987 | 35.008 | Wolbachia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Medium-quality | Genome-fragment | 55.720 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AB044554 | Staphylococcus prophage phiPV83 | 45636 | 33.476 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Peeveelvirus | Peeveelvirus PV83 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_2;cro orf_8;antirepressor orf_12;integrase orf_35 |
| AB063393 | Thermus virus IN93 | 19604 | 65.936 | Thermus | Group I | Hukuchivirus | Hukuchivirus | Unclassified | Matsushitaviridae | Halopanivirales | Laserviricetes | Dividoviricota | Helvetiavirae | Singelaviria | Thermus thermophilus TZ2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Hukuchivirus | Hukuchivirus IN93 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;integrase orf_32 |
| AB102868 | Enterobacteria phage ST104 | 41391 | 47.431 | Enterobacteria | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella typhimurium DT104 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lederbergvirus | Lederbergvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_4;integrase orf_15;antirepressor orf_26 |
| AB231700 | Microcystis phage LMM01 | 162109 | 45.953 | Microcystis | Group I | Fukuivirus | Fukuivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 95.800 | AAI-based (high-confidence) | Fukuivirus | Fukuivirus LMM01 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_9;antirepressor orf_23;integrase orf_176 |
| AB243556 | Staphylococcus phage phiPVL108 | 44857 | 33.469 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Peeveelvirus | Peeveelvirus PVL108 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_2;cro orf_6;cro orf_7;antirepressor orf_8;integrase orf_36 |
| AB255436 | Stx2-converting phage 86 | 60238 | 49.067 | Unspecified | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O86:H-, strain DIJ1 | High-quality | High-quality | 91.800 | AAI-based (high-confidence) | Traversvirus | Traversvirus tv86 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_8;integrase orf_35;antirepressor orf_41;cro orf_64;cro orf_65 |